Connect Exact Online to Mollie
Your customers pay through Mollie, your books are in Exact Online. On the bank statement you see one Mollie payout, in Exact dozens of open invoices. An integration explains that difference payment by payment, so invoices are marked paid automatically and Mollie's fees show up separately.
- Payment for a sales invoice goes to Mollie
- Payments in a dedicated journal comes from Mollie
- Fees, refunds and chargebacks comes from Mollie
- Payout to the bank comes from Mollie
- Open items goes to Mollie
Built for clients including Tata Steel, M&G Investments, Digistore24, Toppers in Concert, Bar-le-Duc and Loogman
Mollie doesn't pay out per payment. The money goes to your Mollie balance and is paid out with fees, refunds and chargebacks already deducted. The Settlements API shows what each payout contains. The Balances API gives every transaction on your balance, and Mollie recommends it for connecting your accounting.
In Exact Online, the question is also how you post it. Each administration allows 60 calls per minute and 5,000 per day. An online store with hundreds of payments a day only fits within that if the integration bundles payments, rather than creating a separate entry per payment.
For each item: which direction it goes, when, and why. This is the starting point; in the first conversation we fit it to your situation.
- 01Payment for a sales invoiceExact Online → Molliewhen an invoice is sent
For an invoice from Exact, the integration creates a payment in Mollie, with the invoice number in the description or metadata.
- 02Payments in a dedicated journalMollie → Exact Onlinewhen a payment succeeds
The integration posts the payment in a dedicated bank journal for Mollie, with the invoice number on the line. That tells Exact which open item it belongs to.
- 03Fees, refunds and chargebacksMollie → Exact Onlinewith every payout
The deducted fees go to a cost account as a separate line, refunds and chargebacks as lines of their own. That way the Mollie journal matches your balance at Mollie.
- 04Payout to the bankMollie → Exact Onlinewhen the money reaches the bank
You post the credit on your bank account against the Mollie journal. If a balance remains there, something hasn't been processed.
- 05Open itemsExact Online → Molliedaily
The integration reads from Exact which invoices are still open, so a payment without a clear reference still gets a suggestion.
Not always. If an existing integration for Exact Online and Mollie does exactly what you need, we'll tell you.
The Exact Online App Store includes the Mollie reconciliation module by Combidesk, which fetches Mollie payments and matches them to open items in Exact. Check whether such an integration also handles fees, refunds and chargebacks, and how it deals with several Mollie profiles.
If your online store already has its own Exact integration, first check what it does with Mollie payments. Otherwise payments get posted twice.
- Payments come from your own platform and only carry an order or customer ID, not an Exact invoice number.
- You have several Mollie profiles or legal entities that belong in different Exact administrations.
- You process so many payments that you have to bundle them to stay within Exact's limits.
- You want failed direct debits or chargebacks to become a task for a colleague straight away.
AI reads, sorts and prepares a suggestion. Where it matters, a person decides.
Payment without a reference
If a payment doesn't match an invoice number, AI looks for the likely open item by name, amount and date, and prepares a suggestion. Matching only happens after approval.
A journal that doesn't balance
If a balance remains on the Mollie journal, AI compares the payout with the posted lines and points out which payment, fee or refund is missing. The bookkeeper corrects it.
One place for payments
If your store integration already posts payments in Exact and a Mollie integration does too, every payment appears twice. Choose one integration to post the Mollie payments.
Invoice number as the reference
Bank lines in Exact have a field for the invoice number. That only works if the invoice number is already on the payment in Mollie. Put it in the description or metadata when the payment is created.
Testing only goes halfway
Mollie's settlement endpoints don't work in test mode. You test payments in test mode and on an Exact demo administration; you test payout processing with real data, read-only at first.
History
The Mollie Balances API doesn't contain data from before 1 July 2022. If you want to reconcile older years, you need another source.
What goes where
Which data moves, in which direction, and which system wins when two values differ. That is written down before anything gets built. For this integration, that means: Payment for a sales invoice, Payments in a dedicated journal, Fees, refunds and chargebacks, Payout to the bank, Open items.
Fields and rules
For every field, how it translates between the systems: statuses, VAT codes, general ledger accounts, item numbers. And what happens with a duplicate or a missing value. For this integration, that means: One place for payments, Invoice number as the reference, Testing only goes halfway, History.
Testing with real cases
In a sandbox or test administration, with the exceptions you actually run into: credit notes, partial deliveries, changed customer details.
Live, with logging and monitoring
Every sync is logged, and when something fails, someone gets an alert. If a vendor changes its API, we update the integration.

No account manager. You talk to someone who builds integrations themselves, and who will tell you when a standard integration is enough.
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Is there an integration between Mollie and Exact Online?
Yes. The Exact Online App Store includes the Mollie reconciliation module by Combidesk, which fetches Mollie payments and matches them to open items. An integration of your own on the Mollie and Exact APIs is also possible.
Why doesn't a Mollie payout match my invoices in Exact?
Because a payout is the balance of payments, minus refunds, chargebacks and fees. Post the individual payments in a dedicated journal for Mollie, and you can explain every difference.
How does Exact know which invoice a Mollie payment belongs to?
Through the invoice number on the bank line. That does require the invoice number on the payment in Mollie, in the description or metadata. Without a fixed reference, matching comes down to amount and name.
Can an integration with lots of payments stay within Exact's limits?
If you design it for that, yes. Each administration allows 60 calls per minute and 5,000 per day. Bundle payments into one bank entry per day or per payout, rather than one entry per payment.
Can I test the integration between Exact and Mollie first?
Partly. You test payments in Mollie's test mode and on an Exact demo administration. The payout endpoints don't work in test mode, so you test that logic with real data, read-only at first.
Related services
- Connect Exact Online to HubSpotConnect Exact Online to HubSpot: which data to exchange, what HubSpot's own app does, and what to watch out for with deals, invoices and payment status.
- Connect Exact Online to SalesforceConnect Exact Online to Salesforce: opportunities to the right administration, payment status back, and a set-up that fits within the Exact API limits.
- Connect Exact Online to PipedriveConnect Exact Online to Pipedrive: won deals become invoices in Exact, payment status comes back to the deal, and what to watch with people and products.
- Connect Exact Online to ShopifyConnect Exact Online to Shopify: orders as sales entries, VAT on EU sales, reconciling Shopify Payments payouts, and keeping stock levels in sync.
- Connect Exact Online to WooCommerceConnect Exact Online to WooCommerce: post orders and refunds, align VAT settings, process payment provider payouts and keep stock levels up to date.
- Connect Exact Online to bolConnect Exact Online to bol.com: post orders, process bol's invoice with commission and fees, upload business invoices and track Fulfilment by bol stock.
Sources
The technical facts on this page come from the vendors' official documentation, checked on 19 September 2026. Vendors change their APIs and limits; when we build an integration, we always check the current state.
- Exact Online App Store: Mollie reconciliation module by Combidesk (in Dutch)
- Exact Online REST API: BankEntries
- Exact Online REST API: BankEntryLines
- Exact Online REST API: ReceivablesList
- Exact Support: API limits
- Exact Support: developer's subscription
- Mollie: Settlements API
- Mollie: Balances API
- Mollie: test mode





